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(Introductory points for stereo-video analysis)
(Introductory points for stereo-video analysis)
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• Videos, calibration (CAL) files, spreadsheets, manuals and all relevant documentation will be available on the server. If you do not have access to the server, ask the team leader.
 
• Videos, calibration (CAL) files, spreadsheets, manuals and all relevant documentation will be available on the server. If you do not have access to the server, ask the team leader.
  
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[[Archivo:Fig2.jpg | Figure 2 – Progress sheet example. Notice the spreadsheet has the six (6) tabs or sheets described in text.]]
Figure 2 – Progress sheet example. Notice the spreadsheet has the six (6) tabs or sheets described in text.
 
  
 
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[[Archivo:Fig3.tif]]  

Revisión del 23:04 20 ago 2019

Sumario

Introductory points for stereo-video analysis

• Our ongoing stereo-DOV campaign at Darwin and Wolf islands cover a total of 15 sites across these two islands: 7 sites at Darwin and 8 sites at Wolf island. Figure 1 shows the location, site names and coordinates for the starting point for each dive.

Archivo:Fig1a Darwin.tif Archivo:Fig1b Wolf.tif Figure 1 – Location of stereo-BRUVs deployments (diamonds) and stereo-DOVs transects (lines) at Darwin (top) and Wolf (bottom) islands. Coordinates given in decimal degrees (CRS: WGS84).

• Before training is started, every analyst must have a Google Drive account. Working spreadsheets will be shared through this platform to ensure all parties analysing the same stereo-DOVs campaign have access to the same document. This will prevent the creation of multiple versions of the same document. • Ensure camera systems have been calibrated prior to the video analysis (See Section 4 - Calibration of camera systems for more information). If cameras were changed in a stereo-DOV system, it will be necessary to recalibrate the system before any videos can be analysed. • Video analysts must be thoroughly trained by a senior team member in the correct use of EventMeasure and/or fish identification. After the initial training period, the new video analyst will have two (2) weeks to examine a ‘testing video’ on their own. This ‘testing video’ is any video that has been previously analysed and checked for accuracy by a senior member of our team. To be deemed competent, analysts must obtain a minimum of 90% accuracy in the identification of species present in the ‘testing video’. • After training is completed, it is expected the analysis will take between 3-4 days per video. • For stereo-DOVs, fish are divided into four (4) categories, each is treated slightly differently during the analysis phase. This will be explained with more detail under Section 5 - Analysing stereo-DOV. o Spp of interest - large carnivorous species o Spp of NO interest - small herbivorous species o Schools - aggregations of more than 20 individuals of the same species o Gringos (Paranthias colonus) • Every video must be analysed by at least two analysts, one will identify the fish and a second person will measure individual fishes and confirm fish identifications. • There is one working spreadsheet called DOVs Progress Sheet for each sampling campaign (Figure 2). Notice the columns in the spreadsheet have been colour coded to match this protocol. You will notice that you will not be able to edit some sheets and/or columns in this spreadsheet. This is because there is either a formula that automatically calculates values or there is reference information that will remain the same throughout this study. The DOVs Progress Sheet has six (6) sheets or tabs: 1. FieldDB – sheet containing information gathered while on the field; 2. progr1-Interest-School-Gring – it contains information about the overall progress for the analysis of species of interest, schooling fish, and gringos; 3. progr2- non Interest – it only contains information for species of no interest to this project; 4. Disease sharks – sheet used to keep track of the sites where hammerheads show signs of having a skin disease (Figure 3). 5. spp – this sheet contains two lists: a. INTEREST SPP – list containing the fish families of interest for this study b. NON INTEREST – list containing the fish families that are not of interest to this project 6. Max Lngths for Cmm Sp – maximum lengths for the most common species found at Darwin and Wolf islands. This information is useful for the Quality Control (see Quality control section). • Videos, calibration (CAL) files, spreadsheets, manuals and all relevant documentation will be available on the server. If you do not have access to the server, ask the team leader.

Figure 2 – Progress sheet example. Notice the spreadsheet has the six (6) tabs or sheets described in text.

Archivo:Fig3.tif Figure 3 – Examples of skin disease in hammerhead sharks that must be recorded in the ‘Disease sharks’ tab of the Progress Sheet.

Data management - How to store data correctly

Folder structure and naming conventions

Calibration folder

Island folders - Darwin and Wolf

DOVs folder
BRUVs folder

Supporting data folder

Converting stereo-videos using Xilisoft Video Converter

Installing or renewing Xilisoft licence in your computer

Creating a stereo-video profile

Load and convert video files

Common errors to avoid while using Xilisoft

Calibration of camera systems

Calibrating stereo-video sets

Checklist to organise calibrations

Analysing calibration videos using CAL software (Quick guide)

Making point measurements

Starting a new project

Loading videos and synchronising

Setting adjustments

Generating stereo camera files

Saving results

Checking calibrations

Recording calibrations completed in the log

Troubleshooting for CAL

Analysing stereo-DOVs videos

Loading videos into EventMeasure

Converted videos

Unconverted videos

Editing information fields and the species list

Loading calibration files

Saving an EMObs file for current analysis

Setting up video analysis periods

Useful sources to aid in fish identification

Species of interest – large carnivorous fish

Identifying and counting individuals of interest

Measuring individuals of interest

Large schools of fish (20 individuals or more)

Non-interest species – herbivorous fish

Identifying and counting individuals of no interest

Measuring individuals of no interest

Gringos (Paranthias colonus)

Downloading GPS data and calculating distance in Basecamp

Analysing Gringo data – Counting individuals

Analysing Gringo data – Measuring individuals

Last steps - Checking your work

Quality control process

Tips and shortcut keys in EM

Renewing EventMeasure licenses

USB keys

Software keys

General troubleshooting in EM

One video is shorter than the other

Videos could not be converted and they are in MP4 format, but EM cannot read them

An EMObs file is opened in EM, but when attempting to review a point in the Data window an error window appears

EM is not recognizing the license key

Maintenance of gear used in stereo-video sampling

Materials needed for maintenance

GoBenthic housings maintenance

SeaGIS housing maintenance

Metal tools

Car battery and winch connections

SCUBA gear